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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10849 and 10850 are separated by 1696 nucleotides
10850 and 10851 are separated by 146 nucleotides
10851 and 10852 are separated by 239 nucleotides
10852 and 10853 are separated by 87 nucleotides
mRNA_2481: 10849 - Hypothetical Protein, at 250,037 to 250,801
10849
mRNA_2482: 10850 - KOG0712 Molecular chaperone (DnaJ superfamily), at 252,498 to 254,224
10850
mRNA_2483: 10851 - K17541 SCYL2 SCY1-like protein 2, at 254,371 to 257,459
10851
mRNA_2484: 10852 - K11498 CENPE centromeric protein E, at 257,699 to 260,992
10852
mRNA_2485: 10853 - K07760 CDK cyclin-dependent kinase, at 261,080 to 262,482
10853
Group
Condition
mRNA
_2481
mRNA
_2482
mRNA
_2483
mRNA
_2484
mRNA
_2485
10849
10850
10851
10852
10853
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
-0.1
-0.1
-2.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.5
-0.2
-0.1
-2.8
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.1
-0.2
-2.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.5
+0.2
-2.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.0
-0.2
-1.5
growth on ypd
YPD
-0.2
-0.2
-0.3
+0.1
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.3
-0.1
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.0
-0.2
+0.3
-1.4
auxotrophy
YNB Glucose
-0.1
+0.1
-0.4
-0.4
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.4
-0.2
-0.6
auxotrophy
Dropout Complete
-0.3
-0.1
-0.4
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.1
-0.1
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.3
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.3
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.3
-0.3
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.4
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.0
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.2
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.3
+0.0
+0.1
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.2
+0.0
+0.0
+1.3
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