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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10850 and 10851 are separated by 146 nucleotides
10851 and 10852 are separated by 239 nucleotides
10852 and 10853 are separated by 87 nucleotides
10853 and 10854 are separated by 391 nucleotides
mRNA_2482: 10850 - KOG0712 Molecular chaperone (DnaJ superfamily), at 252,498 to 254,224
10850
mRNA_2483: 10851 - K17541 SCYL2 SCY1-like protein 2, at 254,371 to 257,459
10851
mRNA_2484: 10852 - K11498 CENPE centromeric protein E, at 257,699 to 260,992
10852
mRNA_2485: 10853 - K07760 CDK cyclin-dependent kinase, at 261,080 to 262,482
10853
mRNA_2486: 10854 - KOG3134 Predicted membrane protein, at 262,874 to 263,661
10854
Group
Condition
mRNA
_2482
mRNA
_2483
mRNA
_2484
mRNA
_2485
mRNA
_2486
10850
10851
10852
10853
10854
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
-0.1
-2.8
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.1
-0.1
-2.8
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.5
+0.2
-2.4
-1.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.2
-2.0
-0.3
growth on ypd
YPD
-0.2
-0.3
+0.1
-1.2
-0.7
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-0.2
-1.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
-0.2
-0.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
+0.3
-1.4
-0.0
auxotrophy
Dropout Complete
-0.1
-0.4
-0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.1
-1.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.1
-0.1
-1.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-0.1
-0.6
-0.3
auxotrophy
YNB Glucose
+0.1
-0.4
-0.4
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
+0.1
-0.4
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
-0.1
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.1
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
-0.3
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.1
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
-0.0
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.0
+0.1
+0.8
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.0
+1.3
-0.0
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