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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10854 and 10855 are separated by 525 nucleotides
10855 and 10856 are separated by 1507 nucleotides
10856 and 10857 are separated by 393 nucleotides
10857 and 10858 are separated by 658 nucleotides
mRNA_2486: 10854 - KOG3134 Predicted membrane protein, at 262,874 to 263,661
10854
mRNA_2487: 10855 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 264,187 to 266,262
10855
mRNA_2488: 10856 - KOG1804 RNA helicase, at 267,770 to 269,827
10856
mRNA_2489: 10857 - HMMPfam-Surfeit locus protein 5 subunit 22 of Mediator complex-PF06179, at 270,221 to 270,948
10857
mRNA_2490: 10858 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 271,607 to 274,886
10858
Group
Condition
mRNA
_2486
mRNA
_2487
mRNA
_2488
mRNA
_2489
mRNA
_2490
10854
10855
10856
10857
10858
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.9
-0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.6
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.6
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.5
-0.1
N.D.
N.D.
growth on ypd
YPD
-0.7
-0.1
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
-0.8
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.5
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.5
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.6
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.5
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
+0.3
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+1.1
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.8
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.8
-0.0
N.D.
N.D.
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