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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10859 and 10860 are separated by 239 nucleotides
10860 and 10861 are separated by 891 nucleotides
10861 and 10862 are separated by 545 nucleotides
10862 and 10863 are separated by 321 nucleotides
mRNA_2491: 10859 - K12837 U2AF2 splicing factor U2AF 65 kDa subunit, at 275,089 to 277,521
10859
mRNA_2492: 10860 - HMMPfam-Rsm1-like-PF08600, at 277,761 to 278,480
10860
mRNA_2493: 10861 - KOG3098 Uncharacterized conserved protein, at 279,372 to 281,338
10861
mRNA_2494: 10862 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 281,884 to 283,232
10862
mRNA_2495: 10863 - K03507 DPB11 DNA replication regulator DPB11, at 283,554 to 287,606
10863
Group
Condition
mRNA
_2491
mRNA
_2492
mRNA
_2493
mRNA
_2494
mRNA
_2495
10859
10860
10861
10862
10863
auxotrophy
Dropout Complete
N.D.
-0.6
+0.1
-0.2
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.0
+0.2
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.2
+0.1
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.1
+0.0
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.1
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.0
+0.3
-0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-0.2
+0.0
-0.1
auxotrophy
YNB Glucose
N.D.
+0.0
+0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
+0.0
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.3
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.0
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
+0.4
+0.1
-0.2
growth on ypd
YPD
N.D.
+0.1
+0.1
+0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.3
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.7
+0.1
-0.0
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.2
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
+0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.3
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.0
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.1
-0.4
+1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.1
+0.6
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