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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10860 and 10861 are separated by 891 nucleotides
10861 and 10862 are separated by 545 nucleotides
10862 and 10863 are separated by 321 nucleotides
10863 and 10864 are separated by 506 nucleotides
mRNA_2492: 10860 - HMMPfam-Rsm1-like-PF08600, at 277,761 to 278,480
10860
mRNA_2493: 10861 - KOG3098 Uncharacterized conserved protein, at 279,372 to 281,338
10861
mRNA_2494: 10862 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 281,884 to 283,232
10862
mRNA_2495: 10863 - K03507 DPB11 DNA replication regulator DPB11, at 283,554 to 287,606
10863
mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288,113 to 290,739
10864
Group
Condition
mRNA
_2492
mRNA
_2493
mRNA
_2494
mRNA
_2495
mRNA
_2496
10860
10861
10862
10863
10864
auxotrophy
Dropout Complete
-0.6
+0.1
-0.2
-1.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.1
-1.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
+0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.2
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
+0.0
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.2
-0.3
+0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.3
-0.3
+0.4
+0.1
auxotrophy
YNB Glucose
+0.0
+0.0
-0.1
-0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.3
-0.3
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.0
-0.4
+0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.1
-0.0
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
-0.1
-0.5
+0.3
growth on ypd
YPD
+0.1
+0.1
+0.0
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.4
+0.1
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.1
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
-0.0
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.2
+0.4
-0.1
growth on oleic acid
YNB Glucose
+0.2
-0.3
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
-0.4
+1.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
-0.1
+0.6
+0.3
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