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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10861 and 10862 are separated by 545 nucleotides
10862 and 10863 are separated by 321 nucleotides
10863 and 10864 are separated by 506 nucleotides
10864 and 10865 are separated by 339 nucleotides
mRNA_2493: 10861 - KOG3098 Uncharacterized conserved protein, at 279,372 to 281,338
10861
mRNA_2494: 10862 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 281,884 to 283,232
10862
mRNA_2495: 10863 - K03507 DPB11 DNA replication regulator DPB11, at 283,554 to 287,606
10863
mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288,113 to 290,739
10864
mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291,079 to 294,153
10865
Group
Condition
mRNA
_2493
mRNA
_2494
mRNA
_2495
mRNA
_2496
mRNA
_2497
10861
10862
10863
10864
10865
auxotrophy
Dropout Complete
+0.1
-0.2
-1.0
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.4
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-1.2
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
-0.4
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
-0.1
-0.3
+0.2
auxotrophy
YNB Glucose
+0.0
-0.1
-0.4
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.5
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.6
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.4
+0.5
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
+0.3
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
+0.0
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
+0.4
-0.1
-0.1
growth on ypd
YPD
+0.1
+0.0
-0.4
+0.2
+0.4
growth on oleic acid
YNB Glucose
-0.3
+0.1
+0.5
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.3
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
+0.5
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
+0.4
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.1
-0.2
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.6
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
+1.2
+0.1
+0.1
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