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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10862 and 10863 are separated by 321 nucleotides
10863 and 10864 are separated by 506 nucleotides
10864 and 10865 are separated by 339 nucleotides
10865 and 10866 are separated by 1070 nucleotides
mRNA_2494: 10862 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 281,884 to 283,232
10862
mRNA_2495: 10863 - K03507 DPB11 DNA replication regulator DPB11, at 283,554 to 287,606
10863
mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288,113 to 290,739
10864
mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291,079 to 294,153
10865
mRNA_2498: 10866 - HMMPfam-Polyketide cyclase / dehydrase and lipid transport-PF10604,SUPERFAMILY--SSF55961, at 295,224 to 296,091
10866
Group
Condition
mRNA
_2494
mRNA
_2495
mRNA
_2496
mRNA
_2497
mRNA
_2498
10862
10863
10864
10865
10866
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-1.2
-0.1
+0.2
-0.7
growth on ricinoleic acid
YNB Glucose
-0.2
-0.4
-0.2
-0.0
-0.8
auxotrophy
Dropout Complete
-0.2
-1.0
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-0.3
+0.2
-0.7
auxotrophy
YNB Glucose
-0.1
-0.4
+0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.4
-0.2
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
+0.3
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.6
-0.3
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
+0.1
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.5
-0.1
-0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.3
-0.0
-0.3
growth on oleic acid
YNB Glucose
+0.1
+0.5
+0.1
+0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
+0.1
+0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
+0.3
+0.0
+0.1
growth on ypd
YPD
+0.0
-0.4
+0.2
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.0
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.5
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+1.2
+0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.6
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
-0.0
+0.2
+0.2
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