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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10863 and 10864 are separated by 506 nucleotides
10864 and 10865 are separated by 339 nucleotides
10865 and 10866 are separated by 1070 nucleotides
10866 and 10867 are separated by 1310 nucleotides
mRNA_2495: 10863 - K03507 DPB11 DNA replication regulator DPB11, at 283,554 to 287,606
10863
mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288,113 to 290,739
10864
mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291,079 to 294,153
10865
mRNA_2498: 10866 - HMMPfam-Polyketide cyclase / dehydrase and lipid transport-PF10604,SUPERFAMILY--SSF55961, at 295,224 to 296,091
10866
mRNA_2499: 10867 - BLAST secreted protein [Moniliophthora roreri MCA 2997], at 297,402 to 298,448
10867
Group
Condition
mRNA
_2495
mRNA
_2496
mRNA
_2497
mRNA
_2498
mRNA
_2499
10863
10864
10865
10866
10867
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
+0.2
-0.7
-2.0
auxotrophy
YNB Glucose 75mM Arginine
-1.2
-0.1
+0.2
-0.7
-1.0
growth on ricinoleic acid
YNB Glucose
-0.4
-0.2
-0.0
-0.8
-1.4
auxotrophy
Dropout Complete
-1.0
-0.1
-0.1
-0.3
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
+0.2
-0.2
-1.8
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.3
-0.1
-0.1
-1.1
auxotrophy
YNB Glucose
-0.4
+0.1
+0.0
-0.1
-0.9
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.1
-0.7
-0.6
growth on oleic acid
YNB Glucose
+0.5
+0.1
+0.1
-0.7
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.0
-0.6
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
+0.3
-0.6
growth on ypd
YPD
-0.4
+0.2
+0.4
-0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
+0.2
+0.2
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.3
-0.2
-0.1
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.3
+0.1
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
+0.2
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
-0.1
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
+0.1
+0.1
-0.3
+0.7
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