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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10866 and 10867 are separated by 1310 nucleotides
10867 and 10868 are separated by 569 nucleotides
10868 and 10869 are separated by 233 nucleotides
10869 and 10870 are separated by 250 nucleotides
mRNA_2498: 10866 - HMMPfam-Polyketide cyclase / dehydrase and lipid transport-PF10604,SUPERFAMILY--SSF55961, at 295,224 to 296,091
10866
mRNA_2499: 10867 - BLAST secreted protein [Moniliophthora roreri MCA 2997], at 297,402 to 298,448
10867
mRNA_2500: 10868 - Hypothetical Protein, at 299,018 to 301,561
10868
mRNA_2501: 10869 - K00852 rbsK, RBKS ribokinase, at 301,795 to 303,224
10869
mRNA_2502: 10870 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 303,475 to 306,650
10870
Group
Condition
mRNA
_2498
mRNA
_2499
mRNA
_2500
mRNA
_2501
mRNA
_2502
10866
10867
10868
10869
10870
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-2.0
-0.1
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.8
-1.4
-0.1
-0.2
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-1.8
-0.1
+0.1
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.6
-2.3
-0.7
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-1.0
+0.4
-0.1
-0.9
growth on oleic acid
YNB Glucose
-0.7
-0.6
+0.1
-0.0
-0.6
growth on oleic acid
YNB Oleic Acid
-0.7
-0.6
+0.1
+0.1
-0.6
auxotrophy
YNB Glucose
-0.1
-0.9
-0.0
+0.0
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.4
-0.7
-0.2
+0.3
auxotrophy
Dropout Complete
-0.3
-1.1
+0.3
+0.2
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-1.1
+0.2
+0.5
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.5
-0.3
-0.3
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.6
+0.2
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
-0.2
+0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.1
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.1
-0.5
-0.1
growth on ypd
YPD
-0.1
-0.4
-0.0
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.5
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.5
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.7
-0.4
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.7
-0.3
+0.1
+0.7
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