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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10870 and 10871 are separated by 527 nucleotides
10871 and 10872 are separated by 1003 nucleotides
10872 and 10873 are separated by 49 nucleotides
10873 and 10874 overlap by 2 nucleotides
mRNA_2502: 10870 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 303,475 to 306,650
10870
mRNA_2503: 10871 - SUPERFAMILY--SSF63829, at 307,178 to 308,891
10871
mRNA_2504: 10872 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 309,895 to 311,581
10872
mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311,631 to 312,608
10873
mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312,607 to 314,311
10874
Group
Condition
mRNA
_2502
mRNA
_2503
mRNA
_2504
mRNA
_2505
mRNA
_2506
10870
10871
10872
10873
10874
auxotrophy
Dropout Complete
-0.6
-0.2
-0.4
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-0.0
-0.3
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
-0.6
-0.6
+0.0
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.6
-0.3
-0.2
+0.0
+0.1
auxotrophy
YNB Glucose
-0.7
+0.1
-0.3
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.7
+0.0
-1.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.2
+0.2
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.4
-0.1
+0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.4
+0.0
+0.3
+0.1
growth on ypd
YPD
-0.1
-0.3
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.6
-0.0
+0.4
+0.0
growth on ricinoleic acid
YNB Glucose
-0.8
+0.2
+0.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.7
-0.0
-0.7
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.0
+0.7
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
+0.1
+0.0
+1.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
+0.1
+1.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
+0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.4
+0.1
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
+0.1
+0.8
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.8
+0.1
+0.9
-0.2
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