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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10873 and 10874 overlap by 2 nucleotides
10874 and 10875 are separated by 648 nucleotides
10875 and 10876 are separated by 904 nucleotides
10876 and 10877 are separated by 432 nucleotides
mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311,631 to 312,608
10873
mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312,607 to 314,311
10874
mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314,960 to 315,808
10875
mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316,713 to 320,410
10876
mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320,843 to 322,229
10877
Group
Condition
mRNA
_2505
mRNA
_2506
mRNA
_2507
mRNA
_2508
mRNA
_2509
10873
10874
10875
10876
10877
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.4
N.D.
-0.5
-0.1
auxotrophy
Dropout Complete
-0.5
+0.0
N.D.
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.0
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-0.1
N.D.
+0.1
+0.9
growth on oleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.1
N.D.
+0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.2
N.D.
+0.2
-0.6
auxotrophy
YNB Glucose
+0.0
+0.1
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
N.D.
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
N.D.
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
N.D.
+0.0
-0.1
growth on ypd
YPD
+0.1
+0.1
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.5
-0.1
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
N.D.
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
N.D.
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
-0.3
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
N.D.
-0.1
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.4
-0.1
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.0
N.D.
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.2
N.D.
+0.3
+0.8
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