Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10874 and 10875 are separated by 648 nucleotides10875 and 10876 are separated by 904 nucleotides10876 and 10877 are separated by 432 nucleotides10877 and 10878 are separated by 217 nucleotides mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312,607 to 314,311 10874 mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314,960 to 315,808 10875 mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316,713 to 320,410 10876 mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320,843 to 322,229 10877 mRNA_2510: 10878 - K09272 SSRP1 structure-specific recognition protein 1, at 322,447 to 324,875 10878
Group Condition mRNA_2506 mRNA_2507 mRNA_2508 mRNA_2509 mRNA_2510
10874 10875 10876 10877 10878
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 N.D. +0.1 -0.8 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. +0.2 -0.6 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.4 N.D. -0.5 -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 N.D. +0.1 -0.2 N.D.
growth on oleic acid YNB Glucose +0.1 N.D. +0.2 -0.4 N.D.
auxotrophy Dropout Complete +0.0 N.D. -0.0 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.0 N.D. +0.0 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. -0.1 -0.0 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 N.D. -0.1 +0.3 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 N.D. -0.1 +0.1 N.D.
growth on ricinoleic acid YNB Glucose -0.1 N.D. -0.1 +0.2 N.D.
auxotrophy YNB Glucose +0.1 N.D. -0.2 +0.3 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.0 N.D. -0.2 +0.4 N.D.
growth on ypd YPD +0.1 N.D. -0.1 +0.3 N.D.
growth on oleic acid YNB Oleic Acid +0.1 N.D. +0.1 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.0 N.D. +0.1 +0.4 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.1 N.D. +0.1 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 N.D. +0.0 +0.6 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 N.D. -0.1 +1.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 N.D. +0.3 +0.8 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.1 N.D. +0.1 +0.9 N.D.
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