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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10875 and 10876 are separated by 904 nucleotides
10876 and 10877 are separated by 432 nucleotides
10877 and 10878 are separated by 217 nucleotides
10878 and 10879 are separated by 598 nucleotides
mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314,960 to 315,808
10875
mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316,713 to 320,410
10876
mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320,843 to 322,229
10877
mRNA_2510: 10878 - K09272 SSRP1 structure-specific recognition protein 1, at 322,447 to 324,875
10878
mRNA_2511: 10879 - Hypothetical Protein, at 325,474 to 325,902
10879
Group
Condition
mRNA
_2507
mRNA
_2508
mRNA
_2509
mRNA
_2510
mRNA
_2511
10875
10876
10877
10878
10879
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.1
N.D.
-2.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.0
N.D.
-1.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.6
N.D.
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.4
N.D.
-1.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
-0.1
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.1
N.D.
-0.6
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
N.D.
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.2
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.9
N.D.
-1.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.4
N.D.
-0.6
auxotrophy
YNB Glucose
N.D.
-0.2
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.8
N.D.
+0.7
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.4
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.6
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.4
N.D.
+0.3
growth on ypd
YPD
N.D.
-0.1
+0.3
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.3
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+1.0
N.D.
+0.0
auxotrophy
Dropout Complete
N.D.
-0.0
-0.1
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.8
N.D.
+0.4
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