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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10882 and 10883 are separated by 296 nucleotides
10883 and 10884 are separated by 254 nucleotides
10884 and 10885 are separated by 1017 nucleotides
10885 and 10886 are separated by 144 nucleotides
mRNA_2514: 10882 - Hypothetical Protein, at 330,199 to 330,672
10882
mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330,969 to 334,313
10883
mRNA_2516: 10884 - KOG0627 Heat shock transcription factor, at 334,568 to 336,151
10884
mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337,169 to 339,877
10885
mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340,022 to 341,494
10886
Group
Condition
mRNA
_2514
mRNA
_2515
mRNA
_2516
mRNA
_2517
mRNA
_2518
10882
10883
10884
10885
10886
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.1
-0.9
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-1.0
-0.5
+0.2
+0.2
growth on oleic acid
YNB Glucose
+0.1
-0.7
-0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
-0.7
+0.2
-0.3
auxotrophy
Dropout Complete
-0.0
-0.5
-0.3
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.6
-0.3
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.2
-0.2
-0.3
+0.0
auxotrophy
YNB Glucose
+0.1
-0.7
-0.2
-0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.1
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.6
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.3
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
+0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.5
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.1
+0.5
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
+0.6
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
+0.2
+0.3
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+1.5
+0.6
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.6
+0.4
+0.1
+0.2
growth on ypd
YPD
-0.0
+1.3
+0.1
-0.0
+0.4
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