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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10883 and 10884 are separated by 254 nucleotides
10884 and 10885 are separated by 1017 nucleotides
10885 and 10886 are separated by 144 nucleotides
10886 and 10887 are separated by 1213 nucleotides
mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330,969 to 334,313
10883
mRNA_2516: 10884 - KOG0627 Heat shock transcription factor, at 334,568 to 336,151
10884
mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337,169 to 339,877
10885
mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340,022 to 341,494
10886
mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342,708 to 344,522
10887
Group
Condition
mRNA
_2515
mRNA
_2516
mRNA
_2517
mRNA
_2518
mRNA
_2519
10883
10884
10885
10886
10887
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-0.9
-0.1
-0.1
+0.3
growth on oleic acid
YNB Glucose
-0.7
-0.2
-0.1
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.5
+0.2
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.3
+0.3
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.7
+0.2
-0.3
+0.2
auxotrophy
Dropout Complete
-0.5
-0.3
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose
-0.7
-0.2
-0.0
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.3
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.6
-0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.2
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.0
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.5
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.2
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.6
+0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
+0.3
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.3
+0.1
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.4
+0.1
+0.2
-0.3
growth on ypd
YPD
+1.3
+0.1
-0.0
+0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.5
+0.6
+0.1
+0.3
+0.5
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