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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10885 and 10886 are separated by 144 nucleotides
10886 and 10887 are separated by 1213 nucleotides
10887 and 10888 are separated by 523 nucleotides
10888 and 10889 are separated by 346 nucleotides
mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337,169 to 339,877
10885
mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340,022 to 341,494
10886
mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342,708 to 344,522
10887
mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345,046 to 346,549
10888
mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346,896 to 348,680
10889
Group
Condition
mRNA
_2517
mRNA
_2518
mRNA
_2519
mRNA
_2520
mRNA
_2521
10885
10886
10887
10888
10889
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.1
-0.1
-1.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.5
-0.1
-2.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.2
-0.2
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.3
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
-0.2
+0.0
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.1
+0.5
-0.8
growth on ypd
YPD
-0.0
+0.4
+0.2
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
-0.0
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.5
-0.2
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.1
+0.4
+0.5
auxotrophy
YNB Glucose
-0.0
+0.3
-0.2
+0.4
+0.3
auxotrophy
Dropout Complete
-0.0
+0.1
-0.1
+0.4
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.1
-0.5
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
-0.1
+0.4
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
+0.1
+0.5
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.5
-0.2
+0.5
+0.4
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+0.2
+0.4
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
+0.2
+0.7
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.3
+0.2
+1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
+0.1
+0.1
+1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
+0.4
+1.0
+0.9
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