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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10886 and 10887 are separated by 1213 nucleotides
10887 and 10888 are separated by 523 nucleotides
10888 and 10889 are separated by 346 nucleotides
10889 and 10890 are separated by 154 nucleotides
mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340,022 to 341,494
10886
mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342,708 to 344,522
10887
mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345,046 to 346,549
10888
mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346,896 to 348,680
10889
mRNA_2522: 10890 - BLAST GPI ethanolamine phosphate transferase 2 [Talaromyces..., at 348,835 to 350,135
10890
Group
Condition
mRNA
_2518
mRNA
_2519
mRNA
_2520
mRNA
_2521
mRNA
_2522
10886
10887
10888
10889
10890
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.1
-1.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.2
-0.8
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.5
-0.1
-2.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
+0.0
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
-0.3
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.5
-0.8
-0.3
growth on ypd
YPD
+0.4
+0.2
-0.2
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.2
-0.0
-0.3
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.4
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
+0.3
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.4
+0.5
-0.2
auxotrophy
YNB Glucose
+0.3
-0.2
+0.4
+0.3
+0.1
auxotrophy
Dropout Complete
+0.1
-0.1
+0.4
+0.6
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.5
+1.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.4
+0.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
+0.7
+0.6
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
+0.5
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.2
+0.5
+0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.1
+1.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
+0.2
+1.8
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.4
+1.0
+0.9
+0.0
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