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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10889 and 10890 are separated by 154 nucleotides
10890 and 10891 are separated by 880 nucleotides
10891 and 10892 are separated by 433 nucleotides
10892 and 10893 are separated by 1038 nucleotides
mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346,896 to 348,680
10889
mRNA_2522: 10890 - BLAST GPI ethanolamine phosphate transferase 2 [Talaromyces..., at 348,835 to 350,135
10890
mRNA_2523: 10891 - Hypothetical Protein, at 351,016 to 351,939
10891
mRNA_2524: 10892 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 352,373 to 353,826
10892
mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354,865 to 358,254
10893
Group
Condition
mRNA
_2521
mRNA
_2522
mRNA
_2523
mRNA
_2524
mRNA
_2525
10889
10890
10891
10892
10893
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
+0.5
-0.2
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-1.6
+0.1
+0.0
-0.1
+0.2
growth on ypd
YPD
-0.4
-0.2
-0.3
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.8
-0.3
+0.7
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.8
+0.2
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.3
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
-0.1
+0.4
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.0
-0.6
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.0
+0.0
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.2
+0.5
-0.3
-0.2
growth on oleic acid
YNB Glucose
+0.5
-0.3
+0.4
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.1
-0.4
+0.6
+0.0
auxotrophy
Dropout Complete
+0.6
-0.0
+0.3
-0.0
-0.1
auxotrophy
YNB Glucose
+0.3
+0.1
+0.2
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.8
-0.2
-0.4
+0.7
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.0
+0.4
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.4
-0.2
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
+0.6
+0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+1.8
-0.2
-0.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
+0.5
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
+0.2
+0.2
+0.0
-0.1
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