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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10891 and 10892 are separated by 433 nucleotides
10892 and 10893 are separated by 1038 nucleotides
10893 and 10894 are separated by 601 nucleotides
10894 and 10895 are separated by 2871 nucleotides
mRNA_2523: 10891 - Hypothetical Protein, at 351,016 to 351,939
10891
mRNA_2524: 10892 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 352,373 to 353,826
10892
mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354,865 to 358,254
10893
mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358,856 to 360,952
10894
mRNA_2527: 10895 - BLAST protein DGCR14-like [Mucor ambiguus], at 363,824 to 364,696
10895
Group
Condition
mRNA
_2523
mRNA
_2524
mRNA
_2525
mRNA
_2526
mRNA
_2527
10891
10892
10893
10894
10895
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.4
+0.0
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
-0.1
-0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
+0.2
-0.0
-0.3
growth on ypd
YPD
-0.3
-0.3
-0.1
+0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
+0.3
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.3
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.3
-0.2
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.1
+0.0
+0.2
growth on oleic acid
YNB Glucose
+0.4
-0.2
-0.0
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
-0.0
+0.1
+0.1
auxotrophy
Dropout Complete
+0.3
-0.0
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
-0.2
+0.7
growth on ricinoleic acid
YNB Glucose
-0.4
+0.7
-0.1
+0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.2
-0.2
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.6
+0.0
+0.4
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
+0.2
+0.3
+0.9
growth on oleic acid
YNB Oleic Acid
+0.7
-0.3
+0.0
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
-0.2
+0.2
+0.5
auxotrophy
YNB Glucose
+0.2
+0.1
+0.0
+0.1
+0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.2
-0.0
+0.2
+0.4
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