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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10893 and 10894 are separated by 601 nucleotides
10894 and 10895 are separated by 2871 nucleotides
10895 and 10896 are separated by 385 nucleotides
10896 and 10897 are separated by 159 nucleotides
mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354,865 to 358,254
10893
mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358,856 to 360,952
10894
mRNA_2527: 10895 - BLAST protein DGCR14-like [Mucor ambiguus], at 363,824 to 364,696
10895
mRNA_2528: 10896 - HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335, at 365,082 to 366,780
10896
mRNA_2529: 10897 - K01613 psd, PISD phosphatidylserine decarboxylase, at 366,940 to 368,677
10897
Group
Condition
mRNA
_2525
mRNA
_2526
mRNA
_2527
mRNA
_2528
mRNA
_2529
10893
10894
10895
10896
10897
growth on ypd
YPD
-0.1
+0.0
+0.4
-0.5
-0.2
auxotrophy
Dropout Complete
-0.1
+0.0
+0.1
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.3
-0.4
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
+0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.5
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
+0.2
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.4
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.4
+0.4
-0.2
-0.4
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.1
+0.5
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.7
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
+0.5
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.5
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
-0.9
+1.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+1.0
+0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.1
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
+0.1
+0.8
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
+0.4
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.2
+0.6
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.3
+0.9
+0.5
auxotrophy
YNB Glucose
+0.0
+0.1
+0.9
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
+0.9
+0.8
+0.2
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