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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10894 and 10895 are separated by 2871 nucleotides
10895 and 10896 are separated by 385 nucleotides
10896 and 10897 are separated by 159 nucleotides
10897 and 10898 are separated by 272 nucleotides
mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358,856 to 360,952
10894
mRNA_2527: 10895 - BLAST protein DGCR14-like [Mucor ambiguus], at 363,824 to 364,696
10895
mRNA_2528: 10896 - HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335, at 365,082 to 366,780
10896
mRNA_2529: 10897 - K01613 psd, PISD phosphatidylserine decarboxylase, at 366,940 to 368,677
10897
mRNA_2530: 10898 - K14634 TIGAR fructose-2,6-bisphosphatase, at 368,950 to 370,646
10898
Group
Condition
mRNA
_2526
mRNA
_2527
mRNA
_2528
mRNA
_2529
mRNA
_2530
10894
10895
10896
10897
10898
auxotrophy
Dropout Complete
+0.0
+0.1
+0.1
-0.5
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.4
+0.4
-0.5
-0.3
growth on ypd
YPD
+0.0
+0.4
-0.5
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.4
-0.2
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.0
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.3
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.4
+0.1
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
+0.3
+0.5
+0.0
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
-0.1
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.5
-0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+1.0
+0.1
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.7
+0.0
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.8
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.5
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
+0.5
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.3
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.9
+1.1
+0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.3
+0.9
+0.5
+0.1
auxotrophy
YNB Glucose
+0.1
+0.9
+0.5
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.6
+0.3
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.9
+0.8
+0.2
+0.1
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