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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10898 and 10899 are separated by 1622 nucleotides
10899 and 10900 are separated by 173 nucleotides
10900 and 10901 are separated by 247 nucleotides
10901 and 10902 are separated by 381 nucleotides
mRNA_2530: 10898 - K14634 TIGAR fructose-2,6-bisphosphatase, at 368,950 to 370,646
10898
mRNA_2531: 10899 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 372,269 to 375,397
10899
mRNA_2532: 10900 - KOG2961 Predicted hydrolase (HAD superfamily), at 375,571 to 377,208
10900
mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377,456 to 384,141
10901
mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384,523 to 387,549
10902
Group
Condition
mRNA
_2530
mRNA
_2531
mRNA
_2532
mRNA
_2533
mRNA
_2534
10898
10899
10900
10901
10902
auxotrophy
Dropout Complete
-0.4
-0.2
-0.6
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-1.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.3
+0.0
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
-0.2
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-0.4
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.2
-0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.6
-0.5
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.4
-1.3
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.5
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.4
-0.0
+0.1
auxotrophy
YNB Glucose
-0.2
-0.0
+0.2
-0.4
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.0
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.8
+0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
-0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.6
+0.0
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.3
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
+0.1
+0.1
+0.2
growth on ypd
YPD
+0.0
+0.9
-0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
-0.2
+0.4
+0.3
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