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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10899 and 10900 are separated by 173 nucleotides
10900 and 10901 are separated by 247 nucleotides
10901 and 10902 are separated by 381 nucleotides
10902 and 10903 are separated by 22 nucleotides
mRNA_2531: 10899 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 372,269 to 375,397
10899
mRNA_2532: 10900 - KOG2961 Predicted hydrolase (HAD superfamily), at 375,571 to 377,208
10900
mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377,456 to 384,141
10901
mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384,523 to 387,549
10902
mRNA_2535: 10903 - Hypothetical Protein, at 387,572 to 388,066
10903
Group
Condition
mRNA
_2531
mRNA
_2532
mRNA
_2533
mRNA
_2534
mRNA
_2535
10899
10900
10901
10902
10903
auxotrophy
Dropout Complete
-0.2
-0.6
-0.1
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
-0.3
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-1.3
+0.0
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-1.1
-0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.4
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
-0.1
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.3
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.3
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.5
+0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.5
-0.4
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.0
-0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.8
+0.4
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
-0.5
+0.2
+0.1
auxotrophy
YNB Glucose
-0.0
+0.2
-0.4
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.1
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
+0.0
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.0
-0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.4
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+0.1
+0.2
+0.2
growth on ypd
YPD
+0.9
-0.2
+0.0
+0.1
-0.1
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