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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10901 and 10902 are separated by 381 nucleotides
10902 and 10903 are separated by 22 nucleotides
10903 and 10904 are separated by 359 nucleotides
10904 and 10905 are separated by 738 nucleotides
mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377,456 to 384,141
10901
mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384,523 to 387,549
10902
mRNA_2535: 10903 - Hypothetical Protein, at 387,572 to 388,066
10903
mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388,426 to 391,874
10904
mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392,613 to 393,652
10905
Group
Condition
mRNA
_2533
mRNA
_2534
mRNA
_2535
mRNA
_2536
mRNA
_2537
10901
10902
10903
10904
10905
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.2
+0.1
-1.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
-0.1
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.1
-1.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
-0.1
-0.3
N.D.
auxotrophy
Dropout Complete
-0.1
-0.4
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose
-0.4
+0.0
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.2
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.1
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
+0.0
+0.2
N.D.
growth on ypd
YPD
+0.0
+0.1
-0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.3
-0.0
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.0
-0.2
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.3
-0.2
+0.2
N.D.
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