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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10903 and 10904 are separated by 359 nucleotides
10904 and 10905 are separated by 738 nucleotides
10905 and 10906 are separated by 169 nucleotides
10906 and 10907 are separated by 272 nucleotides
mRNA_2535: 10903 - Hypothetical Protein, at 387,572 to 388,066
10903
mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388,426 to 391,874
10904
mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392,613 to 393,652
10905
mRNA_2538: 10906 - SUPERFAMILY--SSF56112, at 393,822 to 395,821
10906
mRNA_2539: 10907 - Hypothetical Protein, at 396,094 to 398,437
10907
Group
Condition
mRNA
_2535
mRNA
_2536
mRNA
_2537
mRNA
_2538
mRNA
_2539
10903
10904
10905
10906
10907
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.2
N.D.
-0.8
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-1.0
N.D.
-0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.7
N.D.
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
N.D.
-0.2
-0.7
auxotrophy
Dropout Complete
-0.0
-0.1
N.D.
-0.0
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
N.D.
+0.0
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
-0.1
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose
+0.2
-0.1
N.D.
+0.0
-0.4
growth on ypd
YPD
-0.1
+0.3
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
N.D.
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
N.D.
-0.1
+0.0
growth on oleic acid
YNB Glucose
-0.0
+0.3
N.D.
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.6
N.D.
+0.1
-0.1
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