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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10905 and 10906 are separated by 169 nucleotides
10906 and 10907 are separated by 272 nucleotides
10907 and 10908 are separated by 197 nucleotides
10908 and 10909 are separated by 457 nucleotides
mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392,613 to 393,652
10905
mRNA_2538: 10906 - SUPERFAMILY--SSF56112, at 393,822 to 395,821
10906
mRNA_2539: 10907 - Hypothetical Protein, at 396,094 to 398,437
10907
mRNA_2540: 10908 - SUPERFAMILY--SSF52058, at 398,635 to 399,613
10908
mRNA_2541: 10909 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 400,071 to 401,322
10909
Group
Condition
mRNA
_2537
mRNA
_2538
mRNA
_2539
mRNA
_2540
mRNA
_2541
10905
10906
10907
10908
10909
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.3
-0.1
-2.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.7
-0.0
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.4
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
-0.1
+0.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-0.1
-0.1
-0.4
auxotrophy
YNB Glucose
N.D.
+0.0
-0.4
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
-0.8
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.2
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.0
+0.2
-1.0
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.1
+0.2
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.8
+0.0
-0.1
+0.2
growth on ypd
YPD
N.D.
-0.2
-0.3
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.5
-0.1
+0.0
auxotrophy
Dropout Complete
N.D.
-0.0
-0.7
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.3
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.1
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.4
-0.2
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
-0.4
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
-0.3
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
-0.1
+0.9
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