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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10907 and 10908 are separated by 197 nucleotides
10908 and 10909 are separated by 457 nucleotides
10909 and 10910 are separated by 198 nucleotides
10910 and 10911 are separated by 273 nucleotides
mRNA_2539: 10907 - Hypothetical Protein, at 396,094 to 398,437
10907
mRNA_2540: 10908 - SUPERFAMILY--SSF52058, at 398,635 to 399,613
10908
mRNA_2541: 10909 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 400,071 to 401,322
10909
mRNA_2542: 10910 - Hypothetical Protein, at 401,521 to 403,165
10910
mRNA_2543: 10911 - Hypothetical Protein, at 403,439 to 404,457
10911
Group
Condition
mRNA
_2539
mRNA
_2540
mRNA
_2541
mRNA
_2542
mRNA
_2543
10907
10908
10909
10910
10911
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
-2.1
+0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.0
-1.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.8
-0.3
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.5
-0.5
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.2
-1.1
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.0
+0.0
-1.0
auxotrophy
YNB Glucose
-0.4
-0.2
-0.4
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.8
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
-0.7
-0.2
+0.5
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-0.8
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-1.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
+0.7
+0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.1
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.4
+0.8
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.4
+0.3
+0.7
growth on ypd
YPD
-0.3
-0.3
+0.2
+0.3
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.9
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
+0.2
+0.4
+0.4
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