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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10917 and 10918 are separated by 210 nucleotides
10918 and 10919 are separated by 52 nucleotides
10919 and 10920 are separated by 959 nucleotides
10920 and 10921 are separated by 111 nucleotides
mRNA_2549: 10917 - HMMPfam-Chromatin modification-related protein EAF7-PF07904, at 423,711 to 424,964
10917
mRNA_2550: 10918 - KOG3116 Predicted C3H1-type Zn-finger protein, at 425,175 to 426,192
10918
mRNA_2551: 10919 - K00799 GST, gst glutathione S-transferase, at 426,245 to 427,122
10919
mRNA_2552: 10920 - Hypothetical Protein, at 428,082 to 428,710
10920
mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428,822 to 431,100
10921
Group
Condition
mRNA
_2549
mRNA
_2550
mRNA
_2551
mRNA
_2552
mRNA
_2553
10917
10918
10919
10920
10921
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-2.3
-1.6
-0.4
+0.0
auxotrophy
Dropout Complete
-0.8
-0.4
-1.2
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.4
-0.4
-1.1
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.3
-1.2
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-1.4
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-1.1
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.8
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.5
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose
-0.7
-0.1
+0.2
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
-0.5
+0.3
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
-0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.5
-0.2
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.0
-0.4
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.2
-0.3
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.4
-0.8
+0.7
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.0
+0.6
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
-0.1
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+2.2
-1.0
-0.7
+0.4
-0.0
growth on ypd
YPD
+1.0
-0.0
+0.4
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
+1.2
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.0
+0.0
+1.1
+0.6
+0.0
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