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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10920 and 10921 are separated by 111 nucleotides
10921 and 10922 are separated by 603 nucleotides
10922 and 10923 are separated by 102 nucleotides
10923 and 10924 are separated by 276 nucleotides
mRNA_2552: 10920 - Hypothetical Protein, at 428,082 to 428,710
10920
mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428,822 to 431,100
10921
mRNA_2554: 10922 - BLAST Amino acid/polyamine transporter I [Sporothrix insect..., at 431,704 to 432,671
10922
mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432,774 to 435,316
10923
mRNA_2556: 10924 - Hypothetical Protein, at 435,593 to 437,275
10924
Group
Condition
mRNA
_2552
mRNA
_2553
mRNA
_2554
mRNA
_2555
mRNA
_2556
10920
10921
10922
10923
10924
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.0
-1.2
N.D.
-0.3
auxotrophy
Dropout Complete
-0.2
-0.2
-0.7
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose
-0.2
-0.1
-0.3
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
-1.1
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.4
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.6
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.7
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.3
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
-0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.0
-0.9
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.1
-0.7
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.0
-0.7
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
+0.0
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
+0.3
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.1
-0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.1
-0.3
N.D.
+0.3
growth on ypd
YPD
+0.2
+0.2
+0.8
N.D.
+0.4
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