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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10921 and 10922 are separated by 603 nucleotides
10922 and 10923 are separated by 102 nucleotides
10923 and 10924 are separated by 276 nucleotides
10924 and 10925 are separated by 289 nucleotides
mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428,822 to 431,100
10921
mRNA_2554: 10922 - BLAST Amino acid/polyamine transporter I [Sporothrix insect..., at 431,704 to 432,671
10922
mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432,774 to 435,316
10923
mRNA_2556: 10924 - Hypothetical Protein, at 435,593 to 437,275
10924
mRNA_2557: 10925 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 437,565 to 439,347
10925
Group
Condition
mRNA
_2553
mRNA
_2554
mRNA
_2555
mRNA
_2556
mRNA
_2557
10921
10922
10923
10924
10925
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-1.2
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-1.1
N.D.
+0.4
+0.0
auxotrophy
Dropout Complete
-0.2
-0.7
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose
-0.1
-0.3
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.6
N.D.
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.7
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
N.D.
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.2
N.D.
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
N.D.
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
N.D.
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.7
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.7
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.9
N.D.
+0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
N.D.
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
N.D.
+0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
N.D.
+0.2
-0.0
growth on ypd
YPD
+0.2
+0.8
N.D.
+0.4
-0.3
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