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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10923 and 10924 are separated by 276 nucleotides
10924 and 10925 are separated by 289 nucleotides
10925 and 10926 are separated by 163 nucleotides
10926 and 10927 are separated by 507 nucleotides
mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432,774 to 435,316
10923
mRNA_2556: 10924 - Hypothetical Protein, at 435,593 to 437,275
10924
mRNA_2557: 10925 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 437,565 to 439,347
10925
mRNA_2558: 10926 - KOG3183 Predicted Zn-finger protein, at 439,511 to 440,693
10926
mRNA_2559: 10927 - HMMPfam-Translin family-PF01997,SUPERFAMILY--SSF74784, at 441,201 to 442,474
10927
Group
Condition
mRNA
_2555
mRNA
_2556
mRNA
_2557
mRNA
_2558
mRNA
_2559
10923
10924
10925
10926
10927
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.2
-0.7
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
+0.0
-0.5
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.0
-0.4
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.1
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
-0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.5
-0.2
-0.2
auxotrophy
YNB Glucose
N.D.
-0.2
-0.1
+0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.0
+0.2
+0.1
growth on ypd
YPD
N.D.
+0.4
-0.3
+0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.2
-0.1
+0.3
auxotrophy
Dropout Complete
N.D.
+0.0
-0.1
+0.1
+0.5
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.1
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.5
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.1
-0.0
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.1
+0.5
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.0
+0.4
+0.4
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