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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10927 and 10928 are separated by 653 nucleotides
10928 and 10929 are separated by 2425 nucleotides
10929 and 10930 are separated by 250 nucleotides
10930 and 10931 are separated by 273 nucleotides
mRNA_2559: 10927 - HMMPfam-Translin family-PF01997,SUPERFAMILY--SSF74784, at 441,201 to 442,474
10927
mRNA_2560: 10928 - Hypothetical Protein, at 443,128 to 444,142
10928
mRNA_2561: 10929 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 446,568 to 451,968
10929
mRNA_2562: 10930 - Hypothetical Protein, at 452,219 to 453,821
10930
mRNA_2563: 10931 - Interpro F-box-like, at 454,095 to 455,181
10931
Group
Condition
mRNA
_2559
mRNA
_2560
mRNA
_2561
mRNA
_2562
mRNA
_2563
10927
10928
10929
10930
10931
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.9
-0.0
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-1.2
-0.7
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.6
-0.2
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.9
-0.3
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.5
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.8
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.5
-0.2
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.6
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-0.2
+0.1
+0.1
auxotrophy
Dropout Complete
+0.5
-0.3
-0.3
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
-0.0
+0.1
-0.0
auxotrophy
YNB Glucose
+0.5
-0.6
+0.0
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
-0.3
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
+0.0
+0.1
+0.5
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.0
+0.3
+0.1
growth on ypd
YPD
+0.1
+0.1
-0.2
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.4
+0.4
-0.1
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.2
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.2
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
+0.1
+0.5
+0.4
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