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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10929 and 10930 are separated by 250 nucleotides
10930 and 10931 are separated by 273 nucleotides
10931 and 10932 are separated by 443 nucleotides
10932 and 10933 are separated by 704 nucleotides
mRNA_2561: 10929 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 446,568 to 451,968
10929
mRNA_2562: 10930 - Hypothetical Protein, at 452,219 to 453,821
10930
mRNA_2563: 10931 - Interpro F-box-like, at 454,095 to 455,181
10931
mRNA_2564: 10932 - SUPERFAMILY--SSF52058, at 455,625 to 456,615
10932
mRNA_2565: 10933 - K00799 GST, gst glutathione S-transferase, at 457,320 to 458,239
10933
Group
Condition
mRNA
_2561
mRNA
_2562
mRNA
_2563
mRNA
_2564
mRNA
_2565
10929
10930
10931
10932
10933
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.0
-0.4
-0.7
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.1
+0.4
-0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
-0.3
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.4
-0.1
-0.6
-0.3
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.3
-0.6
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.3
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
+0.1
-0.5
-0.4
auxotrophy
YNB Glucose
+0.0
+0.3
-0.2
-0.7
-0.0
auxotrophy
Dropout Complete
-0.3
+0.2
-0.1
-0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.5
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
-0.0
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.1
-0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.1
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.4
+0.1
-0.4
-0.3
growth on ypd
YPD
-0.2
+0.3
+0.3
+0.5
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.1
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.5
+0.4
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.8
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.2
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+0.5
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
+0.3
+0.6
-0.1
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