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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10931 and 10932 are separated by 443 nucleotides
10932 and 10933 are separated by 704 nucleotides
10933 and 10934 are separated by 691 nucleotides
10934 and 10935 are separated by 103 nucleotides
mRNA_2563: 10931 - Interpro F-box-like, at 454,095 to 455,181
10931
mRNA_2564: 10932 - SUPERFAMILY--SSF52058, at 455,625 to 456,615
10932
mRNA_2565: 10933 - K00799 GST, gst glutathione S-transferase, at 457,320 to 458,239
10933
mRNA_2566: 10934 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 458,931 to 461,054
10934
mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461,158 to 463,055
10935
Group
Condition
mRNA
_2563
mRNA
_2564
mRNA
_2565
mRNA
_2566
mRNA
_2567
10931
10932
10933
10934
10935
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.2
-1.2
-1.0
growth on oleic acid
YNB Glucose
-0.3
-0.6
-0.2
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.6
-0.3
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.4
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose
-0.2
-0.7
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
-0.3
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
-0.2
+0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.5
-0.2
+0.6
+0.5
auxotrophy
Dropout Complete
-0.1
-0.5
+0.1
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-0.0
-0.0
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.2
-0.4
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.7
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.3
+0.2
+0.1
growth on ypd
YPD
+0.3
+0.5
-0.6
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
-0.4
+0.9
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.2
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.7
-0.2
+1.3
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.4
-0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
+0.2
-0.5
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.6
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.4
+0.0
-0.0
+0.3
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