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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10933 and 10934 are separated by 691 nucleotides
10934 and 10935 are separated by 103 nucleotides
10935 and 10936 are separated by 500 nucleotides
10936 and 10937 are separated by 598 nucleotides
mRNA_2565: 10933 - K00799 GST, gst glutathione S-transferase, at 457,320 to 458,239
10933
mRNA_2566: 10934 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 458,931 to 461,054
10934
mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461,158 to 463,055
10935
mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463,556 to 465,484
10936
mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466,083 to 468,142
10937
Group
Condition
mRNA
_2565
mRNA
_2566
mRNA
_2567
mRNA
_2568
mRNA
_2569
10933
10934
10935
10936
10937
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.2
-1.0
-0.2
+0.7
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.0
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
-0.1
+0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
+0.2
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.3
+0.1
-0.5
+0.1
growth on ypd
YPD
-0.6
+0.1
+0.0
+0.3
-0.3
auxotrophy
Dropout Complete
+0.1
+0.2
+0.3
-0.5
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
+0.1
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
+0.5
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.4
+0.1
-0.0
-0.2
auxotrophy
YNB Glucose
-0.0
+0.1
+0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
+0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.3
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.6
+0.5
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.2
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.3
+0.0
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
-0.4
+0.9
+0.3
-0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
-0.0
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+1.3
+0.8
+0.0
+0.3
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