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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10935 and 10936 are separated by 500 nucleotides
10936 and 10937 are separated by 598 nucleotides
10937 and 10938 are separated by 186 nucleotides
10938 and 10939 are separated by 185 nucleotides
mRNA_2567: 10935 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 461,158 to 463,055
10935
mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463,556 to 465,484
10936
mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466,083 to 468,142
10937
mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468,329 to 470,280
10938
mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470,466 to 472,507
10939
Group
Condition
mRNA
_2567
mRNA
_2568
mRNA
_2569
mRNA
_2570
mRNA
_2571
10935
10936
10937
10938
10939
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.2
+0.7
+0.4
-1.7
growth on oleic acid
YNB Glucose
+0.0
-0.3
-0.4
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.1
-0.2
+0.1
auxotrophy
Dropout Complete
+0.3
-0.5
-0.5
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.2
-0.2
-0.5
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.6
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.5
-0.2
-0.3
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
-0.8
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
+0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.1
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
+0.0
-0.2
auxotrophy
YNB Glucose
+0.3
-0.1
-0.2
+0.4
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
-0.5
+0.3
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.1
+0.2
-0.1
growth on ypd
YPD
+0.0
+0.3
-0.3
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
+0.3
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.0
+0.3
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.4
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
+0.1
+0.3
-0.0
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