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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10936 and 10937 are separated by 598 nucleotides
10937 and 10938 are separated by 186 nucleotides
10938 and 10939 are separated by 185 nucleotides
10939 and 10940 overlap by 32 nucleotides
mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463,556 to 465,484
10936
mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466,083 to 468,142
10937
mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468,329 to 470,280
10938
mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470,466 to 472,507
10939
mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472,476 to 474,035
10940
Group
Condition
mRNA
_2568
mRNA
_2569
mRNA
_2570
mRNA
_2571
mRNA
_2572
10936
10937
10938
10939
10940
growth on oleic acid
YNB Glucose
-0.3
-0.4
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.5
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.7
+0.4
-1.7
N.D.
auxotrophy
Dropout Complete
-0.5
-0.5
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.6
-0.1
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.8
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
+0.3
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.3
-0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose
-0.1
-0.2
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
+0.2
+0.1
N.D.
growth on ypd
YPD
+0.3
-0.3
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.3
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
+0.2
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
+0.1
+0.3
N.D.
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