Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 10936 and 10937 are separated by 598 nucleotides10937 and 10938 are separated by 186 nucleotides10938 and 10939 are separated by 185 nucleotides10939 and 10940 overlap by 32 nucleotides mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463,556 to 465,484 10936 mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466,083 to 468,142 10937 mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468,329 to 470,280 10938 mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470,466 to 472,507 10939 mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472,476 to 474,035 10940
Group Condition mRNA_2568 mRNA_2569 mRNA_2570 mRNA_2571 mRNA_2572
10936 10937 10938 10939 10940
growth on oleic acid YNB Glucose -0.3 -0.4 -0.1 -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.2 -0.5 +0.0 N.D.
growth on oleic acid YNB Oleic Acid -0.2 -0.3 -0.2 -0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.7 +0.4 -1.7 N.D.
auxotrophy Dropout Complete -0.5 -0.5 +0.1 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 +0.1 -0.2 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.6 -0.1 +0.3 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.8 +0.3 +0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.0 -0.2 -0.1 +0.2 N.D.
growth on ricinoleic acid YNB Glucose -0.5 +0.3 -0.1 +0.3 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 +0.3 -0.3 +0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.0 +0.0 +0.1 -0.1 N.D.
auxotrophy YNB Glucose -0.1 -0.2 +0.4 +0.0 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.1 +0.2 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.1 +0.2 +0.0 -0.2 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.1 +0.2 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.1 +0.2 +0.1 N.D.
growth on ypd YPD +0.3 -0.3 +0.1 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.1 +0.3 -0.0 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.3 +0.2 -0.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.4 +0.1 +0.3 N.D.
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