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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10938 and 10939 are separated by 185 nucleotides
10939 and 10940 overlap by 32 nucleotides
10940 and 10941 are separated by 196 nucleotides
10941 and 10942 are separated by 130 nucleotides
mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468,329 to 470,280
10938
mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470,466 to 472,507
10939
mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472,476 to 474,035
10940
mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474,232 to 477,732
10941
mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477,863 to 478,879
10942
Group
Condition
mRNA
_2570
mRNA
_2571
mRNA
_2572
mRNA
_2573
mRNA
_2574
10938
10939
10940
10941
10942
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-1.7
N.D.
-0.2
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
N.D.
-0.2
-1.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
N.D.
-0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
N.D.
+0.0
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
N.D.
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.0
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.1
-0.5
auxotrophy
Dropout Complete
+0.1
+0.1
N.D.
-0.1
-0.5
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
N.D.
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
N.D.
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
N.D.
-0.1
-0.0
growth on ypd
YPD
+0.1
+0.4
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose
+0.4
+0.0
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
N.D.
-0.1
+0.2
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