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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10939 and 10940 overlap by 32 nucleotides
10940 and 10941 are separated by 196 nucleotides
10941 and 10942 are separated by 130 nucleotides
10942 and 10943 are separated by 131 nucleotides
mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470,466 to 472,507
10939
mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472,476 to 474,035
10940
mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474,232 to 477,732
10941
mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477,863 to 478,879
10942
mRNA_2575: 10943 - KOG1022 Acetylglucosaminyltransferase EXT2/exostosin 2, at 479,011 to 480,812
10943
Group
Condition
mRNA
_2571
mRNA
_2572
mRNA
_2573
mRNA
_2574
mRNA
_2575
10939
10940
10941
10942
10943
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
N.D.
-0.2
-1.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.2
-1.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.0
-0.9
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.1
-0.4
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.0
-0.3
+0.0
auxotrophy
Dropout Complete
+0.1
N.D.
-0.1
-0.5
+0.1
growth on ypd
YPD
+0.4
N.D.
-0.1
-0.2
-0.2
auxotrophy
YNB Glucose
+0.0
N.D.
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.1
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.0
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.1
+0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.0
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.2
+0.4
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.0
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
-0.1
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.1
+0.4
+0.2
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