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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10947 and 10948 are separated by 99 nucleotides
10948 and 10949 are separated by 593 nucleotides
10949 and 10950 are separated by 48 nucleotides
10950 and 10951 are separated by 102 nucleotides
mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486,195 to 490,612
10947
mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490,712 to 492,348
10948
mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492,942 to 494,422
10949
mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494,471 to 495,097
10950
mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495,200 to 499,404
10951
Group
Condition
mRNA
_2579
mRNA
_2580
mRNA
_2581
mRNA
_2582
mRNA
_2583
10947
10948
10949
10950
10951
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
+0.2
-0.1
-1.1
-0.8
auxotrophy
Dropout Complete
-1.1
-0.1
-0.5
+0.0
-0.6
growth on oleic acid
YNB Oleic Acid
-0.9
-0.3
-0.1
-0.6
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.1
-0.4
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
+0.1
-0.1
-0.6
-0.6
growth on ricinoleic acid
YNB Glucose
-1.2
+0.1
-0.3
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.9
+0.1
-0.7
+0.1
-0.3
growth on oleic acid
YNB Glucose
-0.9
+0.0
-0.4
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.4
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.2
-0.4
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.1
-0.4
+0.3
-0.2
auxotrophy
YNB Glucose
-1.3
-0.0
-0.3
+0.5
-0.3
growth on ypd
YPD
-0.1
+0.2
-0.3
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
+0.4
+0.4
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.4
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.1
+0.4
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.1
-0.6
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
+0.2
+0.3
+0.0
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