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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10948 and 10949 are separated by 593 nucleotides
10949 and 10950 are separated by 48 nucleotides
10950 and 10951 are separated by 102 nucleotides
10951 and 10952 are separated by 239 nucleotides
mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490,712 to 492,348
10948
mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492,942 to 494,422
10949
mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494,471 to 495,097
10950
mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495,200 to 499,404
10951
mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499,644 to 502,553
10952
Group
Condition
mRNA
_2580
mRNA
_2581
mRNA
_2582
mRNA
_2583
mRNA
_2584
10948
10949
10950
10951
10952
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-1.1
-0.8
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.4
-0.3
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
-0.6
-0.4
+0.2
auxotrophy
Dropout Complete
-0.1
-0.5
+0.0
-0.6
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.6
-0.6
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
-0.2
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.7
+0.1
-0.3
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.4
-0.1
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
-0.0
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.3
-0.2
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.1
-0.3
-0.0
growth on ypd
YPD
+0.2
-0.3
-0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.6
+0.2
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.4
+0.1
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.3
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
+0.4
-0.4
-0.1
auxotrophy
YNB Glucose
-0.0
-0.3
+0.5
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.2
+0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.3
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.6
-0.3
-0.1
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