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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10950 and 10951 are separated by 102 nucleotides
10951 and 10952 are separated by 239 nucleotides
10952 and 10953 are separated by 738 nucleotides
10953 and 10954 are separated by 93 nucleotides
mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494,471 to 495,097
10950
mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495,200 to 499,404
10951
mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499,644 to 502,553
10952
mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503,292 to 503,677
10953
mRNA_2586: 10954 - K05765 CFL cofilin, at 503,771 to 504,788
10954
Group
Condition
mRNA
_2582
mRNA
_2583
mRNA
_2584
mRNA
_2585
mRNA
_2586
10950
10951
10952
10953
10954
growth on oleic acid
YNB Oleic Acid
-0.6
-0.4
+0.2
-0.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
+0.3
-1.1
N.D.
auxotrophy
Dropout Complete
+0.0
-0.6
+0.2
-0.7
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
-0.0
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.6
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.3
-0.1
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.4
-0.1
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-0.8
+0.3
+1.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.2
-1.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.4
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.3
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.0
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose
+0.5
-0.3
+0.3
-0.1
N.D.
growth on ypd
YPD
-0.1
-0.0
+0.2
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.4
+0.4
N.D.
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