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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10951 and 10952 are separated by 239 nucleotides
10952 and 10953 are separated by 738 nucleotides
10953 and 10954 are separated by 93 nucleotides
10954 and 10955 are separated by 38287 nucleotides
mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495,200 to 499,404
10951
mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499,644 to 502,553
10952
mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503,292 to 503,677
10953
mRNA_2586: 10954 - K05765 CFL cofilin, at 503,771 to 504,788
10954
mRNA_2587: 10955 - K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1, at 543,076 to 544,917
10955
Group
Condition
mRNA
_2583
mRNA
_2584
mRNA
_2585
mRNA
_2586
mRNA
_2587
10951
10952
10953
10954
10955
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.2
+0.2
N.D.
-4.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.3
+1.1
N.D.
-5.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
-0.2
N.D.
-3.9
auxotrophy
YNB Glucose
-0.3
+0.3
-0.1
N.D.
-3.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
-1.1
N.D.
-2.4
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.3
N.D.
-3.0
auxotrophy
Dropout Complete
-0.6
+0.2
-0.7
N.D.
-1.9
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
-0.9
N.D.
-2.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
+0.1
N.D.
-2.8
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.4
+0.4
N.D.
-2.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
+0.2
N.D.
-2.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
+0.2
N.D.
-2.0
growth on ypd
YPD
-0.0
+0.2
+0.6
N.D.
-2.6
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.0
-0.3
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
-0.5
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
-0.8
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.0
+0.2
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-1.1
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.3
N.D.
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.3
N.D.
+1.7
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