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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10954 and 10955 are separated by 38287 nucleotides
10955 and 10956 are separated by 291 nucleotides
10956 and 10957 are separated by 949 nucleotides
10957 and 10958 are separated by 505 nucleotides
mRNA_2586: 10954 - K05765 CFL cofilin, at 503,771 to 504,788
10954
mRNA_2587: 10955 - K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1, at 543,076 to 544,917
10955
mRNA_2588: 10956 - K03246 EIF3I translation initiation factor 3 subunit I, at 545,209 to 547,043
10956
mRNA_2589: 10957 - Hypothetical Protein, at 547,993 to 548,642
10957
mRNA_2590: 10958 - Hypothetical Protein, at 549,148 to 549,789
10958
Group
Condition
mRNA
_2586
mRNA
_2587
mRNA
_2588
mRNA
_2589
mRNA
_2590
10954
10955
10956
10957
10958
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-4.8
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-5.0
N.D.
+0.6
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-3.9
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose
N.D.
-3.6
N.D.
+0.7
+0.1
growth on oleic acid
YNB Glucose
N.D.
-3.0
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-2.8
N.D.
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-2.4
N.D.
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-2.0
N.D.
-0.2
-0.0
growth on ypd
YPD
N.D.
-2.6
N.D.
+0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-2.9
N.D.
+0.8
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-2.1
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-2.0
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-1.0
N.D.
-0.6
-0.0
auxotrophy
Dropout Complete
N.D.
-1.9
N.D.
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
N.D.
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
N.D.
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
N.D.
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
N.D.
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.8
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.7
N.D.
-0.3
+0.0
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