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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10958 and 10959 are separated by 404 nucleotides
10959 and 10960 are separated by 58 nucleotides
10960 and 10961 are separated by 513 nucleotides
10961 and 10962 are separated by 243 nucleotides
mRNA_2590: 10958 - Hypothetical Protein, at 549,148 to 549,789
10958
mRNA_2591: 10959 - Hypothetical Protein, at 550,194 to 551,919
10959
mRNA_2592: 10960 - HMMPfam-Protein of unknown function (DUF1762)-PF08574, at 551,978 to 553,842
10960
mRNA_2593: 10961 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 554,356 to 555,895
10961
mRNA_2594: 10962 - K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein, at 556,139 to 559,559
10962
Group
Condition
mRNA
_2590
mRNA
_2591
mRNA
_2592
mRNA
_2593
mRNA
_2594
10958
10959
10960
10961
10962
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
-1.8
N.D.
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
-2.0
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.0
-1.5
N.D.
-0.6
auxotrophy
Dropout Complete
-0.1
-0.4
-1.4
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-1.4
N.D.
-0.4
growth on ypd
YPD
+0.0
-0.3
-1.4
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
-0.9
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
N.D.
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
-0.8
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-1.2
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
-0.6
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.9
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-0.6
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
-0.2
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.3
+0.2
N.D.
-0.8
auxotrophy
YNB Glucose
+0.1
-0.1
-0.4
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
+1.2
N.D.
+0.1
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