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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10960 and 10961 are separated by 513 nucleotides
10961 and 10962 are separated by 243 nucleotides
10962 and 10963 are separated by 92 nucleotides
10963 and 10964 are separated by 149 nucleotides
mRNA_2592: 10960 - HMMPfam-Protein of unknown function (DUF1762)-PF08574, at 551,978 to 553,842
10960
mRNA_2593: 10961 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 554,356 to 555,895
10961
mRNA_2594: 10962 - K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein, at 556,139 to 559,559
10962
mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559,652 to 561,565
10963
mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561,715 to 563,654
10964
Group
Condition
mRNA
_2592
mRNA
_2593
mRNA
_2594
mRNA
_2595
mRNA
_2596
10960
10961
10962
10963
10964
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
N.D.
-0.6
-3.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
N.D.
-0.2
-2.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.8
N.D.
-0.9
+0.0
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
N.D.
+0.1
+0.6
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
N.D.
-0.8
-0.2
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.5
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
N.D.
-0.4
+0.7
+0.3
auxotrophy
Dropout Complete
-1.4
N.D.
+0.0
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-1.0
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
+0.0
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.8
-0.5
+0.6
growth on ypd
YPD
-1.4
N.D.
-0.0
+0.7
+0.3
growth on oleic acid
YNB Glucose
-0.9
N.D.
+0.2
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.2
N.D.
+0.4
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.1
+0.2
+0.3
auxotrophy
YNB Glucose
-0.4
N.D.
+0.2
+0.6
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.6
N.D.
+0.2
+1.0
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.3
+0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.7
+0.2
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.1
+0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
N.D.
+0.1
+0.8
+0.5
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