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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10961 and 10962 are separated by 243 nucleotides
10962 and 10963 are separated by 92 nucleotides
10963 and 10964 are separated by 149 nucleotides
10964 and 10965 are separated by 449 nucleotides
mRNA_2593: 10961 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 554,356 to 555,895
10961
mRNA_2594: 10962 - K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein, at 556,139 to 559,559
10962
mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559,652 to 561,565
10963
mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561,715 to 563,654
10964
mRNA_2597: 10965 - Hypothetical Protein, at 564,104 to 565,284
10965
Group
Condition
mRNA
_2593
mRNA
_2594
mRNA
_2595
mRNA
_2596
mRNA
_2597
10961
10962
10963
10964
10965
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.6
-3.2
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-2.0
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
-0.5
+0.6
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.2
+0.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.6
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.9
+0.0
+0.7
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.8
-0.2
+0.6
+0.3
auxotrophy
Dropout Complete
N.D.
+0.0
+0.5
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.2
+0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.3
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.7
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.7
-0.1
-0.4
auxotrophy
YNB Glucose
N.D.
+0.2
+0.6
+0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.2
+0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.8
+0.5
-0.6
growth on ypd
YPD
N.D.
-0.0
+0.7
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
+0.4
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.7
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+1.0
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.7
+0.2
+0.2
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