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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10963 and 10964 are separated by 149 nucleotides
10964 and 10965 are separated by 449 nucleotides
10965 and 10966 are separated by 899 nucleotides
10966 and 10967 are separated by 556 nucleotides
mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559,652 to 561,565
10963
mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561,715 to 563,654
10964
mRNA_2597: 10965 - Hypothetical Protein, at 564,104 to 565,284
10965
mRNA_2598: 10966 - Hypothetical Protein, at 566,184 to 566,984
10966
mRNA_2599: 10967 - KOG2619 Fucosyltransferase, at 567,541 to 568,045
10967
Group
Condition
mRNA
_2595
mRNA
_2596
mRNA
_2597
mRNA
_2598
mRNA
_2599
10963
10964
10965
10966
10967
facs on lipid accumulation
Sorted No BODIPY Gate
-2.0
-0.4
-0.2
+0.4
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-3.2
-0.0
-0.4
+0.2
+1.0
auxotrophy
Dropout Complete
+0.5
+0.0
-0.5
+0.1
-2.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.6
-0.4
-0.4
-1.2
auxotrophy
YNB Glucose 75mM Arginine
+1.0
+0.3
-0.3
+0.0
-2.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
+0.5
-0.6
-0.7
-0.9
auxotrophy
YNB Glucose
+0.6
+0.0
-0.3
+0.1
-1.3
growth on oleic acid
YNB Oleic Acid
+0.7
-0.1
-0.4
-0.2
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+0.1
-0.1
-0.4
growth on oleic acid
YNB Glucose
+0.3
+0.1
-0.4
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
-0.1
+0.3
-1.2
growth on ricinoleic acid
YNB Glucose
+0.7
+0.1
-0.3
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.6
-0.4
+0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.3
+0.4
+0.2
-1.6
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.2
+0.2
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
-0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.6
+0.3
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.2
+0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
+0.2
+0.1
+0.1
growth on ypd
YPD
+0.7
+0.3
-0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.7
+0.0
-0.2
+0.9
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