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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10967 and 10968 are separated by 848 nucleotides
10968 and 10969 are separated by 219 nucleotides
10969 and 10970 are separated by 159 nucleotides
10970 and 10971 are separated by 469 nucleotides
mRNA_2599: 10967 - KOG2619 Fucosyltransferase, at 567,541 to 568,045
10967
mRNA_2600: 10968 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 568,894 to 570,450
10968
mRNA_2601: 10969 - Hypothetical Protein, at 570,670 to 572,190
10969
mRNA_2602: 10970 - HMMPfam-Glycosyltransferase family 10 (fucosyltransferase)-PF00852,SUPERFAMILY--SSF53756, at 572,350 to 572,862
10970
mRNA_2603: 10971 - Hypothetical Protein, at 573,332 to 575,202
10971
Group
Condition
mRNA
_2599
mRNA
_2600
mRNA
_2601
mRNA
_2602
mRNA
_2603
10967
10968
10969
10970
10971
auxotrophy
Dropout Complete
-2.3
-0.3
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
-0.4
+0.1
+0.0
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-2.3
-0.1
+0.2
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
-0.2
+0.0
+0.2
-0.2
auxotrophy
YNB Glucose
-1.3
-0.0
+0.1
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-0.6
-0.0
-0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.8
+0.0
+0.0
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
-0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.6
-0.2
+0.0
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-1.2
+0.0
+0.3
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
+0.2
+0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
-0.3
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.1
+0.2
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
+0.5
+0.2
+0.3
growth on oleic acid
YNB Glucose
+0.0
+0.2
-0.0
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.0
+0.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
-0.0
+0.2
-0.0
-0.3
growth on ypd
YPD
+0.4
+0.6
-0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.3
+0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.3
+0.2
+0.1
+0.2
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