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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10984 and 10985 are separated by 486 nucleotides
10985 and 10986 are separated by 101 nucleotides
10986 and 10987 are separated by 482 nucleotides
10987 and 10988 are separated by 543 nucleotides
mRNA_2616: 10984 - KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins, at 604,328 to 604,979
10984
mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605,466 to 606,411
10985
mRNA_2618: 10986 - Hypothetical Protein, at 606,513 to 607,761
10986
mRNA_2619: 10987 - Hypothetical Protein, at 608,244 to 608,759
10987
mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609,303 to 611,052
10988
Group
Condition
mRNA
_2616
mRNA
_2617
mRNA
_2618
mRNA
_2619
mRNA
_2620
10984
10985
10986
10987
10988
facs on lipid accumulation
Sorted High BODIPY Gate
-4.3
-0.4
N.D.
+0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.3
-0.2
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-4.0
+0.9
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-2.4
+1.5
N.D.
-0.2
-0.1
growth on ypd
YPD
-0.5
-0.5
N.D.
+0.1
+0.2
auxotrophy
Dropout Complete
-0.8
+0.2
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.8
N.D.
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.4
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose
-0.4
+0.3
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
N.D.
+0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
N.D.
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.9
-0.2
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.5
-0.1
N.D.
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.2
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.5
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.7
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.6
N.D.
+0.2
+0.6
growth on ricinoleic acid
YNB Glucose
+1.1
+0.3
N.D.
-0.1
+0.1
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